A dynamic habitat index (DHI) based on satellite derived biophysical proxy (fraction of absorbed photosynthetically active radiation, FAPAR) was used to evaluate the vegetation greenness pattern across deserts to alpine ecosystems in India that account to different biodiversity. The cumulative (DHI-cum), minimum (DHI-min), and seasonal (DHI-sea) DHI were generated using Moderate Resolution Imaging Spectroradiometer (MODIS)-based FAPAR. The higher DHI-cum and DHI-min represented the biodiversity hotspots of India, whereas the DHI-sea was higher in the semi-arid, the Gangetic plain, and the Deccan peninsula. The arid and the trans-Himalaya are dominated with grassland or barren land exhibit very high DHI-sea. The inter-year correlation demonstrated an increase in vegetation greenness in the semi-arid region, and continuous reduction in greenness in the Northeastern region. The DHI components validated using field-measured plant richness data from four biogeographic regions (semi-arid, eastern Ghats, the Western Ghats, and Northeast) demonstrated good congruence. DHI-cum that represents the annual greenness strongly correlated with the plant richness (R2 = 0.90, p-value